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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196225080_196225881_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196225080 - 196225881
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CCCTGTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGTTACATATCT
Flanking Amino Acid:
VAGYPVICITACNPKYEDFD
Intron Amino Acid Position:
2391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
78.1
0.63
0.8
72
32.6
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
53
0.17
2.1
79.26
42.1

Associated Gene:

Gene:
FREM2
Ensembl Gene ID:
ENSAPLG00000005184
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005370
196200137 - 196322870
122734