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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19622578_19630791_R

Intron Information:

Intron Rank:
136196
Intron Class:
major
Intron Phase:
Intron Coordinates:
19622578 - 19630791
Intron Length:
8214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030319
19608846 - 19638657
29812