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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196226041_196226984_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196226041 - 196226984
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAC
5'SS Class:
major
3'SS Sequence:
TTTTCATTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATCA
Flanking Amino Acid:
PDENMVAEIQAAKAIVYIEE
Intron Amino Acid Position:
2338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.9
82.8
32.5
Minor 5ss
39.3
-1.2
2.9
51.9
44.9
Minor BPS
69.7
0.61
1.8
84.85
34.7

Associated Gene:

Gene:
FREM2
Ensembl Gene ID:
ENSAPLG00000005184
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005370
196200137 - 196322870
122734