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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196231470_196231722_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196231470 - 196231722
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
CTTTTCTGCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATAATTTACCT
Flanking Amino Acid:
TIFINDSVSDLPKMQFKESL
Intron Amino Acid Position:
2112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
65.8
36
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.9
0.56
0.9
69.3
36.9
Minor 5ss
36.7
-1.5
2.9
46
43.6
Minor BPS
54.2
0.21
1.8
74.92
41.5

Associated Gene:

Gene:
FREM2
Ensembl Gene ID:
ENSAPLG00000005184
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005370
196200137 - 196322870
122734