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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196234167_196247128_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196234167 - 196247128
Intron Length:
12962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TCTTTTTTCACC
Flanking Amino Acid:
RITIVPDKDDEPAFYFGNDE
Intron Amino Acid Position:
1992

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
83.4
0.75
0.8
78.1
35
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
63
0.39
1.7
72.92
38.9

Associated Gene:

Gene:
FREM2
Ensembl Gene ID:
ENSAPLG00000005184
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005370
196200137 - 196322870
122734