Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196248724_196251552_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

196248724 - 196251552

Intron Length:

2829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

TTGATTTGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTGTTTTTAATG

Flanking Amino Acid:

RGYLGETSFISISTRDGTAK

Intron Amino Acid Position:

1789

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

74.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

67.6

0.4

1.2

65.3

45.4

Minor 5ss

36.2

-1.6

2.9

37.7

Minor BPS

65.3

0.34

1.3

62.99

39.9

Associated Gene:

Gene:

FREM2

Ensembl Gene ID:

ENSAPLG00000005184

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005370

196200137 - 196322870

122734