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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196312483_196317742_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196312483 - 196317742
Intron Length:
5260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACAA
5'SS Class:
major
3'SS Sequence:
TCTGACTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTCTGACTT
Flanking Amino Acid:
GNHSISQFSQADIDDMKICY
Intron Amino Acid Position:
1710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
62.4
37.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79.5
0.66
0.9
72.3
37.6
Minor 5ss
37.4
-1.4
3
47.8
47.7
Minor BPS
63.6
0.51
1.7
84.15
37

Associated Gene:

Gene:
FREM2
Ensembl Gene ID:
ENSAPLG00000005184
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005370
196200137 - 196322870
122734