About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196474441_196474843_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196474441 - 196474843
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTGTTTTAACA
Flanking Amino Acid:
PAATSAIITNDGIGINPAQT
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.7
0.8
0.7
84.9
29.6
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
69.5
0.61
1.3
73.92
38.7

Associated Gene:

Gene:
UFM1
Ensembl Gene ID:
ENSAPLG00000030396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033841
196468803 - 196482199
13397