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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196474884_196481677_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196474884 - 196481677
Intron Length:
6794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TGTCTCTTACAT
Flanking Amino Acid:
TAVLKFAAEEFKVPAATSAI
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
84.1
0.77
0.8
81.7
35.4
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
56.6
0.29
1.7
75.29
41

Associated Gene:

Gene:
UFM1
Ensembl Gene ID:
ENSAPLG00000030396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033841
196468803 - 196482199
13397