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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196481736_196482047_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
196481736 - 196482047
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
ATTGTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTATATTTAAAT
Flanking Amino Acid:
LTSDPRLPYKVLSVPESTPF
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
62.4
37.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.9
0.65
0.9
75
39.1
Minor 5ss
30.5
-2.2
3.1
36.8
40.4
Minor BPS
60.6
0.41
1.6
75.07
41.4

Associated Gene:

Gene:
UFM1
Ensembl Gene ID:
ENSAPLG00000030396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033841
196468803 - 196482199
13397