About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196663813_196663854_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
196663813 - 196663854
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCCGGGGAG
5'SS Class:
major
3'SS Sequence:
GGAGGAGGAGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGAGGAG
U12 Branch Point Sequence:
AGGAGGAGGAGG
Flanking Amino Acid:
GGCLAGQAAAEGGGAAAAMM
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.3
52
42.5
Major BPS
31.4
-1.1
1.5
16.9
34.5
Major PPT
36.5
-0.7
1.6
21.2
35.9
Minor 5ss
12.7
-4.3
3.7
19.9
37.9
Minor BPS
23
-2.2
2
19.54
27.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034130
196663699 - 196664796
1098