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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196699569_196700328_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
196699569 - 196700328
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TATCTGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCATATCT
Flanking Amino Acid:
FRMKYPHVVVGALAASAPIW
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
77.5
32.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.6
0.64
0.9
73.4
36.7
Minor 5ss
30.4
-2.2
3.2
31.7
42.6
Minor BPS
59.2
0.37
1.9
81.49
39.8

Associated Gene:

Gene:
PRCP
Ensembl Gene ID:
ENSAPLG00000012966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025733
196688771 - 196717971
29201
ENSAPLT00000013507
196689375 - 196705856
16482