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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196702141_196717833_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196702141 - 196717833
Intron Length:
15693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TTGTTTTTGACA
Flanking Amino Acid:
PYLTRYLSQQIDHFGFDENL
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
82
0.72
1
79.9
37.7
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
72.3
0.7
1.1
77.15
33.9

Associated Gene:

Gene:
PRCP
Ensembl Gene ID:
ENSAPLG00000012966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025733
196688771 - 196717971
29201