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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196721523_196723284_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
196721523 - 196723284
Intron Length:
1762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTACTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATGTTTTTACTC
Flanking Amino Acid:
FFGVTAGNLQRCIEDFNQLS
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83
0.74
0.8
74.8
39.9
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
55.7
0.16
1.5
63.28
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044230
196720304 - 196727690
7387
ENSAPLT00000042263
196720919 - 196727690
6772
ENSAPLT00000025561
196720304 - 196727936
7633