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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196723403_196725251_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196723403 - 196725251
Intron Length:
1849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTATACTAATT
Flanking Amino Acid:
IGKRFIFGVKGCASEDGGCS
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.3
0.68
0.7
77.8
24
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
49.2
0.02
1.9
72.98
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044230
196720304 - 196727690
7387
ENSAPLT00000042263
196720919 - 196727690
6772
ENSAPLT00000025561
196720304 - 196727936
7633