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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196740503_196744288_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
196740503 - 196744288
Intron Length:
3786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTGCCAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTGTGCCAAAAG
Flanking Amino Acid:
TVEINGEKVKLQIWDTAGQE
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.5
37.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
54.2
0.09
1.2
53.6
40.8
Minor 5ss
33.3
-1.9
3.1
43.9
43.5
Minor BPS
41.8
-0.7
2.4
53.03
47.3

Associated Gene:

Gene:
RAB30
Ensembl Gene ID:
ENSAPLG00000019842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017379
196737984 - 196745941
7958