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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196744373_196745848_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196744373 - 196745848
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
ACTTGTTTAACA
Flanking Amino Acid:
KTCLVRRFTQGLFPPGQGAT
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.8
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
37
-1.5
3.2
47.6
48
Minor BPS
65.5
0.48
1.8
73.1
39.3

Associated Gene:

Gene:
RAB30
Ensembl Gene ID:
ENSAPLG00000019842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017379
196737984 - 196745941
7958