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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196816960_196817962_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196816960 - 196817962
Intron Length:
1003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGAC
5'SS Class:
major
3'SS Sequence:
GACATTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCTCTTCAAAC
Flanking Amino Acid:
LGGLRIGLGTGRSYGTTVDW
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.4
38.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
70.7
0.47
0.9
61.8
44.1
Minor 5ss
28.5
-2.5
3.6
40.8
45.8
Minor BPS
61.8
0.35
1.6
71.74
39.5

Associated Gene:

Gene:
SYTL2
Ensembl Gene ID:
ENSAPLG00000011673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046695
196815728 - 196857804
42077
ENSAPLT00000046608
196815728 - 196857804
42077
ENSAPLT00000027392
196816814 - 196857804
40991
ENSAPLT00000012246
196816814 - 196857804
40991