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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196826068_196827355_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
196826068 - 196827355
Intron Length:
1288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCTCTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AACTTTTGAATT
Flanking Amino Acid:
DQERNENAPGISTVPPQPDQ
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
55
0.11
1.7
65.7
41
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
56.7
0.29
1.4
67.59
37.7

Associated Gene:

Gene:
SYTL2
Ensembl Gene ID:
ENSAPLG00000011673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046695
196815728 - 196857804
42077
ENSAPLT00000027392
196816814 - 196857804
40991