About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196826068_196828584_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
196826068 - 196828584
Intron Length:
2517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCTCTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AACTTTTGAATT
Flanking Amino Acid:
KEELALSAEDVSTVPPQPDQ
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
80.3
32.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
55
0.11
1.7
65.7
41
Minor 5ss
39.8
-1.1
2.9
51.1
40
Minor BPS
56.7
0.29
1.4
67.59
37.7

Associated Gene:

Gene:
SYTL2
Ensembl Gene ID:
ENSAPLG00000011673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046608
196815728 - 196857804
42077