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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196826068_196829632_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
196826068 - 196829632
Intron Length:
3565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TGCTGCTCTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AACTTTTGAATT
Flanking Amino Acid:
SLEDIPSATSISTVPPQPDQ
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
70.5
35.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
55
0.11
1.7
65.7
41
Minor 5ss
35.9
-1.6
2.8
41.3
39
Minor BPS
56.7
0.29
1.4
67.59
37.7

Associated Gene:

Gene:
SYTL2
Ensembl Gene ID:
ENSAPLG00000011673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012246
196816814 - 196857804
40991