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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196829735_196834589_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196829735 - 196834589
Intron Length:
4855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTCTCGTAACA
Flanking Amino Acid:
SNTNSAALQQGSEEELNPVL
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
66.3
45.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
70.9
0.47
1
65.7
39.8
Minor 5ss
38.2
-1.3
3
48.4
47.3
Minor BPS
58.3
0.26
2
73.25
38.4

Associated Gene:

Gene:
SYTL2
Ensembl Gene ID:
ENSAPLG00000011673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012246
196816814 - 196857804
40991
ENSAPLT00000046695
196815728 - 196857804
42077
ENSAPLT00000046608
196815728 - 196857804
42077
ENSAPLT00000027392
196816814 - 196857804
40991