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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196836278_196837279_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196836278 - 196837279
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ATACATCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTCTCTGTATAC
Flanking Amino Acid:
PDILPQLSKKEILSPSIESQ
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
84.2
33.9
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
70.8
0.47
0.9
63.1
38.4
Minor 5ss
40.6
-1.1
3
51.6
45.1
Minor BPS
46.3
-0.3
2.3
62.82
43.1

Associated Gene:

Gene:
SYTL2
Ensembl Gene ID:
ENSAPLG00000011673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046608
196815728 - 196857804
42077
ENSAPLT00000027392
196816814 - 196857804
40991
ENSAPLT00000012246
196816814 - 196857804
40991
ENSAPLT00000046695
196815728 - 196857804
42077