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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196837380_196837960_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196837380 - 196837960
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTGACTCCAATT
Flanking Amino Acid:
SVKAAVSPVKQRRNPFNSTV
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
88.2
0.86
0.6
88.1
21.7
Minor 5ss
47.6
-0.2
2.8
64.3
47.2
Minor BPS
48.3
-0
1.9
69.59
41.7

Associated Gene:

Gene:
SYTL2
Ensembl Gene ID:
ENSAPLG00000011673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027392
196816814 - 196857804
40991
ENSAPLT00000012246
196816814 - 196857804
40991
ENSAPLT00000046695
196815728 - 196857804
42077
ENSAPLT00000046608
196815728 - 196857804
42077