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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196838034_196843725_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
196838034 - 196843725
Intron Length:
5692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTTGCTGAAGT
Flanking Amino Acid:
QEEEELKSSSSSKTVTSGLD
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87
0.83
0.7
81.4
30.6
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
53.2
0.18
2.2
77.65
44.4

Associated Gene:

Gene:
SYTL2
Ensembl Gene ID:
ENSAPLG00000011673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046608
196815728 - 196857804
42077
ENSAPLT00000027392
196816814 - 196857804
40991
ENSAPLT00000012246
196816814 - 196857804
40991
ENSAPLT00000046695
196815728 - 196857804
42077