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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196843862_196846683_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196843862 - 196846683
Intron Length:
2822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCATGTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TCTTCTTCCATG
Flanking Amino Acid:
ASMRRKPAAVAEVSQSKSNK
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
61.3
0.28
1
62
30.6
Major PPT
74.2
0.55
0.9
69
36.7
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
48.5
-0.2
2
58.73
44

Associated Gene:

Gene:
SYTL2
Ensembl Gene ID:
ENSAPLG00000011673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046695
196815728 - 196857804
42077
ENSAPLT00000046608
196815728 - 196857804
42077
ENSAPLT00000027392
196816814 - 196857804
40991
ENSAPLT00000012246
196816814 - 196857804
40991