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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196846833_196857382_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
196846833 - 196857382
Intron Length:
10550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CATTTTTCAATC
Flanking Amino Acid:
ELKKAEEERVRHLPEKIKDD
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.7
0.8
0.7
77.7
31.1
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
56.2
0.18
1.5
62.78
37.4

Associated Gene:

Gene:
SYTL2
Ensembl Gene ID:
ENSAPLG00000011673
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046695
196815728 - 196857804
42077
ENSAPLT00000046608
196815728 - 196857804
42077
ENSAPLT00000027392
196816814 - 196857804
40991
ENSAPLT00000012246
196816814 - 196857804
40991