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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19686186_19689386_R

Intron Information:

Intron Rank:
140778
Intron Class:
major
Intron Phase:
Intron Coordinates:
19686186 - 19689386
Intron Length:
3201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTCCTTCAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
73
0.52
0.8
69.8
29.5
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
67.1
0.62
1.9
85.06
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026641
19684628 - 19692988
8361