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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196881278_196883154_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196881278 - 196883154
Intron Length:
1877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
CCAACTCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATATTTCAATA
Flanking Amino Acid:
EEKNKEYHERNNRLKEEQQA
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
35.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
63.5
0.31
0.8
56.9
33.1
Minor 5ss
34.3
-1.8
3.2
40
40.1
Minor BPS
50.5
0.01
1.5
59.51
34

Associated Gene:

Gene:
CCDC83
Ensembl Gene ID:
ENSAPLG00000012173
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012673
196875965 - 196894297
18333