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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196886994_196887859_F

Intron Information:

Intron Rank:
6
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
196886994 - 196887859
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCCCTT
5'SS Class:
weak_minor
3'SS Sequence:
TGTGTTTTCCCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TGGTCTTAAATT
Flanking Amino Acid:
TKKSKEQAQESAVRYLDKSS
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
65.3
46
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
80.6
0.69
0.9
72.8
42.2
Minor 5ss
69
0.64
2.3
82.6
36.8
Minor BPS
62.7
0.48
1.7
76
41.5

Associated Gene:

Gene:
CCDC83
Ensembl Gene ID:
ENSAPLG00000012173
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012673
196875965 - 196894297
18333