About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196892748_196894111_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196892748 - 196894111
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGATAT
U12 Branch Point Sequence:
TTCTCTGCAACT
Flanking Amino Acid:
SLYEVEQDFQEYLKLGPLES
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
49
-0
1.1
44.8
38.3
Major PPT
82.2
0.73
0.9
87.5
23.3
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
54.6
0.22
2.2
79.65
42.8

Associated Gene:

Gene:
CCDC83
Ensembl Gene ID:
ENSAPLG00000012173
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012673
196875965 - 196894297
18333