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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196901283_196905836_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196901283 - 196905836
Intron Length:
4554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GGTTTTTCATCT
Flanking Amino Acid:
NPFGPVPGAQIQFM*
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
84.9
26.3
Major BPS
100
1.24
0.5
100
0
Major PPT
84.9
0.78
0.8
76.8
37.2
Minor 5ss
40
-1.1
2.7
50.4
46.1
Minor BPS
49.7
0.06
1.8
69.27
41.7

Associated Gene:

Gene:
PICALM
Ensembl Gene ID:
ENSAPLG00000012265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030578
196901268 - 196964330
63063