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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196902300_196905836_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196902300 - 196905836
Intron Length:
3537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TCTTTCCTACTA
Flanking Amino Acid:
NPFGPVPGAQLSAASSPSSQ
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
84.9
26.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
76.7
0.6
0.8
71.2
34.5
Minor 5ss
40
-1.1
2.7
50.4
46.1
Minor BPS
50.9
0.02
1.9
66.95
40.3

Associated Gene:

Gene:
PICALM
Ensembl Gene ID:
ENSAPLG00000012265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023036
196902197 - 196964330
62134
ENSAPLT00000022814
196902197 - 196964330
62134
ENSAPLT00000012854
196902197 - 196964330
62134
ENSAPLT00000025001
196902197 - 196964330
62134