Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196907686_196911332_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

196907686 - 196911332

Intron Length:

3647

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

CCTCCTCTAATT

Flanking Amino Acid:

PTTAWNAPTLAPPVMAYPAT

Intron Amino Acid Position:

620

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

75.9

35.2

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

0.79

0.7

82.1

29.9

Minor 5ss

38.8

-1.3

2.9

45.4

43.9

Minor BPS

54.2

0.21

1.7

69.5

42.1

Associated Gene:

Gene:

PICALM

Ensembl Gene ID:

ENSAPLG00000012265

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012854

196902197 - 196964330

62134