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Intron Name: Anas_platyrhynchos_platyrhynchos_1_196909889_196911332_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

196909889 - 196911332

Intron Length:

1444

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

CTGGGAAATACAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

CATTATGTAATT

Flanking Amino Acid:

PTTAWNAPTLNGMHFPQYAP

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

75.9

35.2

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

56.7

0.15

1.1

47.6

43.3

Minor 5ss

38.8

-1.3

2.9

45.4

43.9

Minor BPS

48.7

-0

2.1

69.44

42.1

Associated Gene:

Gene:

PICALM

Ensembl Gene ID:

ENSAPLG00000012265

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025001

196902197 - 196964330

62134

ENSAPLT00000023036

196902197 - 196964330

62134

ENSAPLT00000022814

196902197 - 196964330

62134

ENSAPLT00000030578

196901268 - 196964330

63063