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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196911901_196911990_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196911901 - 196911990
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTGTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
TTTTTCCTACTT
Flanking Amino Acid:
LDSSLANLVGNLGIGNGTAK
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
71.8
0.49
1.1
68.1
42.1
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
59.8
0.38
1.9
83.92
37.4

Associated Gene:

Gene:
PICALM
Ensembl Gene ID:
ENSAPLG00000012265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023036
196902197 - 196964330
62134
ENSAPLT00000022814
196902197 - 196964330
62134
ENSAPLT00000012854
196902197 - 196964330
62134
ENSAPLT00000030578
196901268 - 196964330
63063
ENSAPLT00000025001
196902197 - 196964330
62134