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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196912123_196913031_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196912123 - 196913031
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTATCATTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTGCTTATCA
Flanking Amino Acid:
KSSNVVLDSGGFDELGGLLK
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.6
0.55
0.8
69.6
35.5
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
67.1
0.53
2
83.19
37.9

Associated Gene:

Gene:
PICALM
Ensembl Gene ID:
ENSAPLG00000012265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025001
196902197 - 196964330
62134
ENSAPLT00000023036
196902197 - 196964330
62134
ENSAPLT00000022814
196902197 - 196964330
62134
ENSAPLT00000012854
196902197 - 196964330
62134
ENSAPLT00000030578
196901268 - 196964330
63063