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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196913140_196922636_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196913140 - 196922636
Intron Length:
9497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
AAAACATTAAAC
Flanking Amino Acid:
AAPQVGSTWGGFTPSPVAQP
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
50.1
-0
1.7
59.18
38.3

Associated Gene:

Gene:
PICALM
Ensembl Gene ID:
ENSAPLG00000012265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022814
196902197 - 196964330
62134