Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196915698_196917569_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

196915698 - 196917569

Intron Length:

1872

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAAGTAC

5'SS Class:

major

3'SS Sequence:

CATGCCTTATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGCCAT

U12 Branch Point Sequence:

CATGCCTTATCA

Flanking Amino Acid:

SRTPTHEMFVDSFCGPQAYP

Intron Amino Acid Position:

469

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

65.1

35.2

Major BPS

47.8

-0.1

1.6

58.2

48.3

Major PPT

69.3

0.43

66.7

Minor 5ss

36.5

-1.5

3.4

44.9

Minor BPS

60.4

0.32

1.8

68.22

44.2

Associated Gene:

Gene:

PICALM

Ensembl Gene ID:

ENSAPLG00000012265

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030578

196901268 - 196964330

63063

ENSAPLT00000023036

196902197 - 196964330

62134

ENSAPLT00000012854

196902197 - 196964330

62134