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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196922738_196924870_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
196922738 - 196924870
Intron Length:
2133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTGTCGTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTGTATTAATT
Flanking Amino Acid:
DIFSTPSSSNSTSKLPNDLL
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.7
0.65
0.9
73.7
36.9
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
60.4
0.41
1.7
77.3
39.4

Associated Gene:

Gene:
PICALM
Ensembl Gene ID:
ENSAPLG00000012265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023036
196902197 - 196964330
62134
ENSAPLT00000022814
196902197 - 196964330
62134
ENSAPLT00000012854
196902197 - 196964330
62134
ENSAPLT00000025001
196902197 - 196964330
62134