About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196923425_196924870_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
196923425 - 196924870
Intron Length:
1446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
CTCATTTCAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
CTACCCTTAAAC
Flanking Amino Acid:
DIFSTPSSSNRTLNATVTLL
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
62
0.27
1.1
63.8
35.9
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
67.1
0.52
1.5
70.43
40.2

Associated Gene:

Gene:
PICALM
Ensembl Gene ID:
ENSAPLG00000012265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030578
196901268 - 196964330
63063