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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196927553_196928670_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
196927553 - 196928670
Intron Length:
1118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCCC
5'SS Class:
major
3'SS Sequence:
TGTTTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTGTTTTATTA
Flanking Amino Acid:
RISEFLKVAEQVGIDRGDIP
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
63.1
41.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86.6
0.82
0.8
81
35.3
Minor 5ss
38.5
-1.3
3.1
51.7
45
Minor BPS
57.3
0.23
1.6
69.82
37.7

Associated Gene:

Gene:
PICALM
Ensembl Gene ID:
ENSAPLG00000012265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012854
196902197 - 196964330
62134
ENSAPLT00000030578
196901268 - 196964330
63063
ENSAPLT00000025001
196902197 - 196964330
62134
ENSAPLT00000023036
196902197 - 196964330
62134
ENSAPLT00000022814
196902197 - 196964330
62134