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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196928778_196930095_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
196928778 - 196930095
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATATA
5'SS Class:
major
3'SS Sequence:
TTGCTGTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATG
Flanking Amino Acid:
AYNEGIINLLEKYFDMKKNQ
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
80.4
34.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.7
0.62
0.9
72.4
37.8
Minor 5ss
38.2
-1.3
2.9
42.5
44.5
Minor BPS
71.8
0.55
1.5
76.08
35.8

Associated Gene:

Gene:
PICALM
Ensembl Gene ID:
ENSAPLG00000012265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023036
196902197 - 196964330
62134
ENSAPLT00000022814
196902197 - 196964330
62134
ENSAPLT00000012854
196902197 - 196964330
62134
ENSAPLT00000030578
196901268 - 196964330
63063
ENSAPLT00000025001
196902197 - 196964330
62134