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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_196930816_196932872_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
196930816 - 196932872
Intron Length:
2057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTACAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTTTGTACAAAC
Flanking Amino Acid:
VAFDFTKVKRGADGVMRTMS
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
78.1
36.3
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
68.7
0.42
1
63.9
41
Minor 5ss
35.7
-1.6
3
42.9
43.6
Minor BPS
45.1
-0.3
2.2
64.84
40.6

Associated Gene:

Gene:
PICALM
Ensembl Gene ID:
ENSAPLG00000012265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023036
196902197 - 196964330
62134
ENSAPLT00000022814
196902197 - 196964330
62134
ENSAPLT00000012854
196902197 - 196964330
62134
ENSAPLT00000030578
196901268 - 196964330
63063
ENSAPLT00000025001
196902197 - 196964330
62134