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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197016605_197019615_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197016605 - 197019615
Intron Length:
3011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGCTCC
5'SS Class:
major
3'SS Sequence:
TGAATGTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GTCTGTATAATT
Flanking Amino Acid:
NPGDLSGDENDDAVSIESGT
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.3
62.8
38.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
73.7
0.53
1
69.5
45.7
Minor 5ss
41.1
-1
2.9
50.6
39.5
Minor BPS
48.9
-0
2
68.98
42.6

Associated Gene:

Gene:
EED
Ensembl Gene ID:
ENSAPLG00000012886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013496
197016482 - 197032741
16260