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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197019769_197024200_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197019769 - 197024200
Intron Length:
4432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
YSFKCVNSLKEDHGQPLFGV
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.5
0.69
0.9
73.6
36
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
EED
Ensembl Gene ID:
ENSAPLG00000012886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013496
197016482 - 197032741
16260