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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197024294_197025179_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197024294 - 197025179
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATCAAT
U12 Branch Point Sequence:
TTTTTTCTAACA
Flanking Amino Acid:
LVFATVGSNRVTLYECHSQG
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
33.7
Major BPS
56.8
0.17
1.3
66.4
36.8
Major PPT
88.1
0.86
0.8
85.4
27.8
Minor 5ss
33.2
-1.9
2.8
38.8
40.3
Minor BPS
70.7
0.64
1.6
83.44
30.4

Associated Gene:

Gene:
EED
Ensembl Gene ID:
ENSAPLG00000012886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013496
197016482 - 197032741
16260