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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197025246_197025968_F

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
197025246 - 197025968
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CGAGGTGTTGTAG|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TGTTCCTTAACA
Flanking Amino Acid:
RLLQSYVDADADENFYTCAW
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
62.3
44.7
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
58
0.18
1
50
43.7
Minor 5ss
94.6
1.5
0.8
89.3
22.6
Minor BPS
91.5
1.3
0.8
92.6
26.7

Associated Gene:

Gene:
EED
Ensembl Gene ID:
ENSAPLG00000012886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013496
197016482 - 197032741
16260