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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197027863_197028781_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197027863 - 197028781
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TTCATATATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATATAT
Flanking Amino Acid:
EGHRDEVLSADYDLLGEKIM
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.5
0.48
0.9
66.9
38.5
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
50.6
0.1
1.9
75.34
40.8

Associated Gene:

Gene:
EED
Ensembl Gene ID:
ENSAPLG00000012886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013496
197016482 - 197032741
16260