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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197028916_197030013_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
197028916 - 197030013
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGTAT
U12 Branch Point Sequence:
TTTCCCCGAACC
Flanking Amino Acid:
SYEYNPNKTNRPFISQKIHF
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82
38.1
Major BPS
59.2
0.23
1.4
61.1
45.5
Major PPT
78.4
0.64
0.7
73.8
30.6
Minor 5ss
36.4
-1.5
3
51.7
44.8
Minor BPS
61.8
0.35
1.8
78.3
36.3

Associated Gene:

Gene:
EED
Ensembl Gene ID:
ENSAPLG00000012886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013496
197016482 - 197032741
16260